LanTree
About the database
Automated annotation and curation of nitrogenase genes using profile hidden Markov models and conserved residue matching.
Source code
LanTree is developed in the open. The repository contains the analysis scripts, HMM seeds, web application, and reproducibility files.
Data provenance
Source data: Genome Taxonomy Database (GTDB) R232.
Manually curated seed files include nifH, nifD, nifK, nifE, nifN, nifB, anfG, vnfG, and anfO.
Acknowledgements
LanTree relies on the Genome Taxonomy Database and the open-source bioinformatics tools documented in the repository.
This section will be expanded as project contributors and supporting resources are formally documented.
License
No license file is currently included in the LanTree repository. Please contact the project maintainers before redistributing code or data.
External contributors
Researchers who choose to contribute their ORCID iD when submitting results are listed here.
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